Jantjebeton - the advantage for me of Yoast breadcrumbs over the standard ones is that you have more control over the way they are displayed. You can set the breadcrumb text for a given post / page (see the Advanced tab under the 'WordPress SEO by Yoast' settings on each page / post edit screen) so the breadcrumb is not fixed as the page / post title. So you can neaten the breadcrumb trail up considerably.
Also, in my theme I found that the WooCommerce breadcrumbs were different to the WP ones elsewhere on my site in terms of layout, separator, style and format. By using the Yoast ones everywhere I got consistency of design and format.
To add the Yoast breadcrumbs to all the other pages, follow the instructions on the 'Internal Links' section of the Yoast plugin settings in your WP admin area. There's some code that you need to add to your templates to get the breadcrumbs to show on the non-WC pages too.
Hope that helps... James