This is exactly what is happening to me too. On my homepage my sitename is correctly displaying, but on all my other pages it does not display. I have manually added it through SEO Titles & Metas and forced rewrite of titles but it still doesn't fix it. My site is
http://www.acenights.com.au
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marksjo on "[Plugin: WordPress SEO by Yoast] %%sitename%% not showing up in category or post titles..."
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